Welcome to the forums @daniel_!
You probably need to bind and unbind the node from the selected bone in the Skeleton using the bind_child_node_to_bone and unbind_child_node_to_bone functions. That should make the node follow along or not, as needed. Do note that these functions are deprecated and likely will be removed/replaced in future versions of Godot. You may want to look into making your own, custom BoneAttachment node using GDScript if your project relies on reparenting BoneAttachment nodes (though in future versions of Godot, there may not be issues when reparenting BoneAttachment nodes).
Also:
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